A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-05-29, 09:35 UTC
based on data in:
/home/ubuntu/April-7/NPM-sample-qc/tests/NA12878-chr14-AKT1_1000genomes-dragen-3.7.6/work/d4/01e07332ad951f29eae56a30653191
General Statistics
| Sample Name | Vars | SNP | Indel | Ts/Tv |
|---|---|---|---|---|
| NA12878-chr14-AKT1 | 10321 | 8489 | 1843 | 2.13 |
Bcftools
1.15.1
HTSlib: 1.19
Bcftools contains utilities for variant calling and manipulating VCFs and BCFs.DOI: 10.1093/gigascience/giab008.
Variant Substitution Types
Variant Quality
Indel Distribution
Variant depths
Read depth support distribution for called variants
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Group | Software | Version |
|---|---|---|
| Bcftools | Bcftools | 1.15.1 |
| HTSlib | 1.19 |